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While trying to use QuickBooks Integration Manager with Web Timesheet, the Client Invoices option is missing. The version of Integration manager is 5.5.

This issue is occurring because the 'Client Invoice' option is not enabled in the Quick Book Integration Manager. Please find the steps below to enable this option:

Open QuickBooks and then open the QuickBooks integration Manager.
Click on the option called Wizards in the QuickBooks integration Manager.
Put a check in the box beside Client Invoice and click on Save.

This will enable the time and expenses sub option to Client Invoice. If any of these two option is not required, it can be unchecked and disabled accordingly.